Index

A

adjacency_matrix() (boolforge.boolean_network.BooleanNetwork method)

B

bin2dec() (in module boolforge.utils) bool_to_poly() (in module boolforge.utils) BooleanFunction (class in boolforge.boolean_function) BooleanNetwork (class in boolforge.boolean_network) boolforge.boolean_function module

boolforge.boolean_network module boolforge.generate module boolforge.utils module

C

check_if_empty() (in module boolforge.utils)

D

dec2bin() (in module boolforge.utils)

F

f_from_expression() (in module boolforge.utils)

G

generate_networkx_graph() (boolforge.boolean_network.BooleanNetwork method) generate_networkx_graph_from_edges() (boolforge.boolean_network.BooleanNetwork method) get_absolute_bias() (boolforge.boolean_function.BooleanFunction method) get_attractors_and_robustness_measures_synchronous() (boolforge.boolean_network.BooleanNetwork method) get_attractors_and_robustness_measures_synchronous_exact() (boolforge.boolean_network.BooleanNetwork method) get_attractors_synchronous() (boolforge.boolean_network.BooleanNetwork method) get_attractors_synchronous_exact() (boolforge.boolean_network.BooleanNetwork method) get_average_sensitivity() (boolforge.boolean_function.BooleanFunction method) get_canalizing_depth() (boolforge.boolean_function.BooleanFunction method) get_canalizing_strength() (boolforge.boolean_function.BooleanFunction method) get_derrida_value() (boolforge.boolean_network.BooleanNetwork method) get_edge_controlled_network() (boolforge.boolean_network.BooleanNetwork method) get_edge_effectiveness() (boolforge.boolean_function.BooleanFunction method) get_effective_degree() (boolforge.boolean_function.BooleanFunction method) get_essential_network() (boolforge.boolean_network.BooleanNetwork method) get_essential_variables() (boolforge.boolean_function.BooleanFunction method)

get_external_inputs() (boolforge.boolean_network.BooleanNetwork method) get_ffls() (boolforge.boolean_network.BooleanNetwork method) get_ffls_from_I() (boolforge.boolean_network.BooleanNetwork method) get_input_redundancy() (boolforge.boolean_function.BooleanFunction method) get_kset_canalizing_proportion() (boolforge.boolean_function.BooleanFunction method) get_layer_structure() (boolforge.boolean_function.BooleanFunction method) get_layer_structure_of_an_NCF_given_its_Hamming_weight() (in module boolforge.utils) get_number_of_essential_variables() (boolforge.boolean_function.BooleanFunction method) get_outdegrees() (boolforge.boolean_network.BooleanNetwork method) get_signed_adjacency_matrix() (boolforge.boolean_network.BooleanNetwork method) get_signed_effective_graph() (boolforge.boolean_network.BooleanNetwork method) get_steady_states_asynchronous() (boolforge.boolean_network.BooleanNetwork method) get_steady_states_asynchronous_given_one_initial_condition() (boolforge.boolean_network.BooleanNetwork method) get_strongly_connected_components() (boolforge.boolean_network.BooleanNetwork method) get_symmetry_groups() (boolforge.boolean_function.BooleanFunction method) get_type_of_inputs() (boolforge.boolean_function.BooleanFunction method) get_type_of_loop() (boolforge.boolean_network.BooleanNetwork method)

I

is_canalizing() (boolforge.boolean_function.BooleanFunction method) is_constant() (boolforge.boolean_function.BooleanFunction method) is_degenerated() (boolforge.boolean_function.BooleanFunction method)

is_k_canalizing() (boolforge.boolean_function.BooleanFunction method) is_kset_canalizing() (boolforge.boolean_function.BooleanFunction method) is_monotonic() (boolforge.boolean_function.BooleanFunction method)

M

module boolforge.boolean_function boolforge.boolean_network boolforge.generate boolforge.utils

R

random_degenerated_function() (in module boolforge.generate) random_degrees() (in module boolforge.generate) random_edge_list() (in module boolforge.generate) random_function() (in module boolforge.generate) random_function_with_bias() (in module boolforge.generate) random_function_with_exact_hamming_weight() (in module boolforge.generate) random_k_canalizing_function() (in module boolforge.generate) random_k_canalizing_function_with_specific_layer_structure() (in module boolforge.generate) random_linear_function() (in module boolforge.generate)

random_NCF() (in module boolforge.generate) random_nested_canalizing_function() (in module boolforge.generate) random_network() (in module boolforge.generate) random_non_canalizing_function() (in module boolforge.generate) random_non_canalizing_non_degenerated_function() (in module boolforge.generate) random_non_degenerated_function() (in module boolforge.generate) random_null_model() (in module boolforge.generate) random_wiring_diagram() (in module boolforge.generate) rewire_wiring_diagram() (in module boolforge.generate)

T

to_bnet() (boolforge.boolean_network.BooleanNetwork method)

to_cana() (boolforge.boolean_function.BooleanFunction method) (boolforge.boolean_network.BooleanNetwork method)

U

update_network_SDDS() (boolforge.boolean_network.BooleanNetwork method) update_network_synchronously() (boolforge.boolean_network.BooleanNetwork method)

update_network_synchronously_many_times() (boolforge.boolean_network.BooleanNetwork method) update_single_node() (boolforge.boolean_network.BooleanNetwork method)