Index

_

__add__() (boolforge.boolean_function.BooleanFunction method) __and__() (boolforge.boolean_function.BooleanFunction method) __call__() (boolforge.boolean_function.BooleanFunction method) (boolforge.boolean_network.BooleanNetwork method) __invert__() (boolforge.boolean_function.BooleanFunction method) __mul__() (boolforge.boolean_function.BooleanFunction method)

__or__() (boolforge.boolean_function.BooleanFunction method) __repr__() (boolforge.boolean_function.BooleanFunction method) __rmul__() (boolforge.boolean_function.BooleanFunction method) __str__() (boolforge.boolean_function.BooleanFunction method) (boolforge.boolean_network.BooleanNetwork method) __weakref__ (boolforge.boolean_network.WiringDiagram attribute) __xor__() (boolforge.boolean_function.BooleanFunction method)

B

bin2dec() (in module boolforge.utils) bool_to_poly() (in module boolforge.utils) BooleanFunction (class in boolforge.boolean_function) BooleanNetwork (class in boolforge.boolean_network) boolforge.bio_models module boolforge.boolean_function module

boolforge.boolean_network module boolforge.generate module boolforge.utils module

C

check_if_empty() (in module boolforge.utils)

compute_synchronous_state_transition_graph() (boolforge.boolean_network.BooleanNetwork method)

D

dec2bin() (in module boolforge.utils)

display_truth_table() (in module boolforge.boolean_function)

F

f_from_expression() (in module boolforge.utils) fetch_file() (in module boolforge.bio_models) fetch_file_bytes() (in module boolforge.bio_models) find_all_indices() (in module boolforge.utils)

flatten() (in module boolforge.utils) from_cana() (boolforge.boolean_function.BooleanFunction class method) (boolforge.boolean_network.BooleanNetwork class method) from_DiGraph() (boolforge.boolean_network.WiringDiagram class method) from_string() (boolforge.boolean_network.BooleanNetwork class method)

G

generate_networkx_graph() (boolforge.boolean_network.WiringDiagram method) generate_networkx_graph_from_edges() (boolforge.boolean_network.WiringDiagram method) get_absolute_bias() (boolforge.boolean_function.BooleanFunction method) get_activities() (boolforge.boolean_function.BooleanFunction method) get_attractors_and_robustness_measures_synchronous() (boolforge.boolean_network.BooleanNetwork method) get_attractors_and_robustness_measures_synchronous_exact() (boolforge.boolean_network.BooleanNetwork method) get_attractors_synchronous() (boolforge.boolean_network.BooleanNetwork method) get_attractors_synchronous_exact() (boolforge.boolean_network.BooleanNetwork method) get_average_sensitivity() (boolforge.boolean_function.BooleanFunction method) get_bio_models_from_repository() (in module boolforge.bio_models) get_canalizing_depth() (boolforge.boolean_function.BooleanFunction method) get_canalizing_strength() (boolforge.boolean_function.BooleanFunction method) get_canalizing_strength_of_variables() (boolforge.boolean_function.BooleanFunction method) get_constants() (boolforge.boolean_network.WiringDiagram method) get_content_in_remote_folder() (in module boolforge.bio_models) get_derrida_value() (boolforge.boolean_network.BooleanNetwork method) get_edge_effectiveness() (boolforge.boolean_function.BooleanFunction method) get_effective_degree() (boolforge.boolean_function.BooleanFunction method) get_entropy_of_basin_size_distribution() (in module boolforge.boolean_network) get_essential_variables() (boolforge.boolean_function.BooleanFunction method) get_ffls() (boolforge.boolean_network.WiringDiagram method)

get_hamming_weight() (boolforge.boolean_function.BooleanFunction method) get_input_redundancy() (boolforge.boolean_function.BooleanFunction method) get_kset_canalizing_proportion() (boolforge.boolean_function.BooleanFunction method) get_kset_canalizing_proportion_of_variables() (boolforge.boolean_function.BooleanFunction method) get_layer_structure() (boolforge.boolean_function.BooleanFunction method) get_layer_structure_from_canalized_outputs() (in module boolforge.boolean_function) get_layer_structure_of_an_NCF_given_its_Hamming_weight() (in module boolforge.utils) get_modular_structure() (boolforge.boolean_network.WiringDiagram method) get_network_with_edge_controls() (boolforge.boolean_network.BooleanNetwork method) get_network_with_fixed_source_nodes() (boolforge.boolean_network.BooleanNetwork method) get_network_with_node_controls() (boolforge.boolean_network.BooleanNetwork method) get_number_of_essential_variables() (boolforge.boolean_function.BooleanFunction method) get_outdegrees() (boolforge.boolean_network.WiringDiagram method) get_source_nodes() (boolforge.boolean_network.BooleanNetwork method) get_steady_states_asynchronous() (boolforge.boolean_network.BooleanNetwork method) get_steady_states_asynchronous_given_one_initial_condition() (boolforge.boolean_network.BooleanNetwork method) get_strongly_connected_components() (boolforge.boolean_network.WiringDiagram method) get_symmetry_groups() (boolforge.boolean_function.BooleanFunction method) get_type_of_inputs() (boolforge.boolean_function.BooleanFunction method) get_type_of_loop() (boolforge.boolean_network.WiringDiagram method) get_types_of_regulation() (boolforge.boolean_network.BooleanNetwork method)

I

is_canalizing() (boolforge.boolean_function.BooleanFunction method) is_constant() (boolforge.boolean_function.BooleanFunction method) is_degenerate() (boolforge.boolean_function.BooleanFunction method) is_k_canalizing() (boolforge.boolean_function.BooleanFunction method)

is_kset_canalizing() (boolforge.boolean_function.BooleanFunction method) is_list_or_array_of_floats() (in module boolforge.utils) is_list_or_array_of_ints() (in module boolforge.utils) is_monotonic() (boolforge.boolean_function.BooleanFunction method)

L

load_model() (in module boolforge.bio_models)

M

module boolforge.bio_models boolforge.boolean_function boolforge.boolean_network boolforge.generate boolforge.utils

R

random_degenerate_function() (in module boolforge.generate) random_degrees() (in module boolforge.generate) random_edge_list() (in module boolforge.generate) random_function() (in module boolforge.generate) random_function_with_bias() (in module boolforge.generate) random_function_with_exact_hamming_weight() (in module boolforge.generate) random_k_canalizing_function() (in module boolforge.generate) random_k_canalizing_function_with_specific_layer_structure() (in module boolforge.generate) random_linear_function() (in module boolforge.generate)

random_NCF() (in module boolforge.generate) random_nested_canalizing_function() (in module boolforge.generate) random_network() (in module boolforge.generate) random_non_canalizing_function() (in module boolforge.generate) random_non_canalizing_non_degenerate_function() (in module boolforge.generate) random_non_degenerate_function() (in module boolforge.generate) random_null_model() (in module boolforge.generate) random_wiring_diagram() (in module boolforge.generate) remove_constants() (boolforge.boolean_network.BooleanNetwork method) rewire_wiring_diagram() (in module boolforge.generate)

S

simplify_functions() (boolforge.boolean_network.BooleanNetwork method)

T

to_bnet() (boolforge.boolean_network.BooleanNetwork method) to_cana() (boolforge.boolean_function.BooleanFunction method) (boolforge.boolean_network.BooleanNetwork method)

to_logical() (boolforge.boolean_function.BooleanFunction method) to_polynomial() (boolforge.boolean_function.BooleanFunction method) to_truth_table() (boolforge.boolean_function.BooleanFunction method) (boolforge.boolean_network.BooleanNetwork method)

U

update_network_SDDS() (boolforge.boolean_network.BooleanNetwork method) update_network_synchronously() (boolforge.boolean_network.BooleanNetwork method)

update_network_synchronously_many_times() (boolforge.boolean_network.BooleanNetwork method) update_single_node() (boolforge.boolean_network.BooleanNetwork method)

W

WiringDiagram (class in boolforge.boolean_network)