Documentation
- Boolean Function
display_truth_table()get_layer_structure_from_canalized_outputs()BooleanFunctionBooleanFunction.from_cana()BooleanFunction.__str__()BooleanFunction.__repr__()BooleanFunction.__add__()BooleanFunction.__mul__()BooleanFunction.__rmul__()BooleanFunction.__and__()BooleanFunction.__or__()BooleanFunction.__xor__()BooleanFunction.__invert__()BooleanFunction.__call__()BooleanFunction.to_polynomial()BooleanFunction.to_truth_table()BooleanFunction.to_cana()BooleanFunction.to_logical()BooleanFunction.is_constant()BooleanFunction.is_degenerate()BooleanFunction.is_monotonic()BooleanFunction.is_canalizing()BooleanFunction.is_k_canalizing()BooleanFunction.is_kset_canalizing()BooleanFunction.get_hamming_weight()BooleanFunction.get_essential_variables()BooleanFunction.get_number_of_essential_variables()BooleanFunction.get_type_of_inputs()BooleanFunction.get_symmetry_groups()BooleanFunction.get_absolute_bias()BooleanFunction.get_activities()BooleanFunction.get_average_sensitivity()BooleanFunction.get_layer_structure()BooleanFunction.get_canalizing_depth()BooleanFunction.get_kset_canalizing_proportion()BooleanFunction.get_kset_canalizing_proportion_of_variables()BooleanFunction.get_canalizing_strength()BooleanFunction.get_canalizing_strength_of_variables()BooleanFunction.get_input_redundancy()BooleanFunction.get_edge_effectiveness()BooleanFunction.get_effective_degree()
- Boolean Network
get_entropy_of_basin_size_distribution()WiringDiagramWiringDiagram.from_DiGraph()WiringDiagram.get_outdegrees()WiringDiagram.get_constants()WiringDiagram.get_strongly_connected_components()WiringDiagram.get_modular_structure()WiringDiagram.get_ffls()WiringDiagram.generate_networkx_graph()WiringDiagram.generate_networkx_graph_from_edges()WiringDiagram.get_type_of_loop()WiringDiagram.__weakref__
BooleanNetworkBooleanNetwork.remove_constants()BooleanNetwork.from_cana()BooleanNetwork.from_string()BooleanNetwork.to_cana()BooleanNetwork.to_bnet()BooleanNetwork.to_truth_table()BooleanNetwork.__str__()BooleanNetwork.__call__()BooleanNetwork.get_types_of_regulation()BooleanNetwork.simplify_functions()BooleanNetwork.get_source_nodes()BooleanNetwork.get_network_with_fixed_source_nodes()BooleanNetwork.get_network_with_node_controls()BooleanNetwork.get_network_with_edge_controls()BooleanNetwork.update_single_node()BooleanNetwork.update_network_synchronously()BooleanNetwork.update_network_synchronously_many_times()BooleanNetwork.update_network_SDDS()BooleanNetwork.get_steady_states_asynchronous()BooleanNetwork.get_steady_states_asynchronous_given_one_initial_condition()BooleanNetwork.get_attractors_synchronous()BooleanNetwork.compute_synchronous_state_transition_graph()BooleanNetwork.get_attractors_synchronous_exact()BooleanNetwork.get_derrida_value()BooleanNetwork.get_attractors_and_robustness_measures_synchronous_exact()BooleanNetwork.get_attractors_and_robustness_measures_synchronous()
- Generate
random_function()random_function_with_bias()random_function_with_exact_hamming_weight()random_linear_function()random_non_degenerate_function()random_degenerate_function()random_non_canalizing_function()random_non_canalizing_non_degenerate_function()random_k_canalizing_function()random_k_canalizing_function_with_specific_layer_structure()random_nested_canalizing_function()random_NCF()random_degrees()random_edge_list()random_wiring_diagram()rewire_wiring_diagram()random_network()random_null_model()
- Bio Models
- Utils